You may decide that you want to run just the payroll in the program. The program will allow you to only do the payroll portion of the business. It will calculate your withholdings based on the information that you provide for each employee. It will also allow you to do just 1099s, which can be e-filed within the program. Form 941s and 940s are also available in the program to print, and can also be e-filed at this time.